Hi and welcome hullcityafc,
nice to hear about your plans.
1st i plan on using the JRK12v12 x 3
-> ok. Motiondave, Bobbuilt (and other here) are real experts on this boards!
Perhaps I can help you a bit.
what is the wiring process of these is it pc via usb + power supply >JRK12v12 >pot and motor
-> you may have a look here:
http://www.abload.de/img/110msno.jpg The manual of the Jrk is available
http://www.pololu.com/docs/0J38 -> there are info's on connecting too
what steps can be taken to prevent any damage to the JRK12v12 or motor
I learned by myself that you have to take care about your motors!!! I grilled one of my Jrk's because of a leak of ground.
The goal is this:
http://www.x-sim.de/forum/gallery/image.php?album_id=2&image_id=246 (thanks Bobbuilt)
1. Test the motors with out the Jrks plugged into it. basically if your power supply can run one or both motors in both directions, this can be do by wiring the motors directy to the power supply, then a quick on/off or diconnect your pots and test that the power supply can spin them in both directions.
While spinning test with a test light by placing clip on positive of powersupply and the probe on the casing, test in serveral spots if it lights up ya go a power leak not good will cause jrk to drop out evem blow up if there is enough amps.
The place the clip on the earth of the power supply and probe on the motor body in several spots and if it lights up you have a earth leak.
If it fails this and you cannot isolate them then i suggest finding some new motors.
If you mention this and if the stall current of your winches isn't higher than 40A --> I think no worry about jrk's or motor's. + Buy a proper haetsink and a fan for the Jrk's!
If you want to protect your PC Mainboard -->
http://shop.trenz-electronic.de/catalog/product_info.php?products_id=812&language=de you can use something like this to connect your Jrk's to PC. But I think I am the only one using this and it is not required.
We got some other discussion in past about the Jrk's here -> don't panic about them... this boards are used sucessfully very long time now by alot of users. The most important part is get your motors "free of potetial and ground leaks in both turning directions".
Power supply:
Car battries should be fine - as they can do >360A 12V 36Ah f.e. - enough for the complete setup but you will have to charge it up again.
If you go for power supply be sure it will last your motors. The important is the current (stall (load)). Floris had some prob's with bigger motors and 30A power supplies and is going for 40A per motor now, I think.
My wipers use about 18A stallcurrent each but winches sound a bit bigger
I'm sure others will reply soon too. Hope I could help you a bit for beginning?
Best regards
yokoyoko