Right now I'm designing an opto-isolation module that goes between the AMC and h-bridge, to separate the grounds and eliminate all noise problems that make the AMC board reset.
I would suggest to check the motors you are using to see if their power cables make any kind internal connection to their housing. Its very common especially for car wiper motors to use the motor housing body as ground. Since the h-bridge rotates the "ground" connection of the motor to Positive voltage too it may make path through your simulator metal frame to the other motor's ground and eventually cause short circuit and mosfets burn.
Thanos